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How to install in Ubuntu 16.04 (with conda)

wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh
(you should restart shell!)
conda create --name osgeo python=3.5
source activate osgeo
conda install -c conda-forge -c rios rsgislib
conda install -c conda-forge rios
conda install -c conda-forge tuiview
conda install -c conda-forge scikit-learn matplotlib h5py
conda install -c ipython
exit
(you completed installation)

(afterwards, you should type the followings whenever you want to start using RSGISlib)
source activate osgeo
ipython

注: condaの外のpythonやipythonを使わないように注意。それらを使うと, conda環境内の設定が使えず, エラーが出まくって何もできない。

How to use

Image segmentation

$ source activate osgeo
$ ~/miniconda3/pkgs/rsgislib-3.2.0-py35_2/bin/rsgissegmentation.py -i N06W053_96-10_stack_lee.kea -o N06W053_96-10_segs.kea -m N06W053_96-10_meansegs.kea -t ./tmp/ -k 30 -n 50 -d 1000000

How to install in Ubuntu 16.04 (without conda)

## RSGISLib

sudo apt-get install libmpfr-dev mercurial libcgal-dev
mkdir ~/tmp
cd ~/tmp
# boost
cd ~/tmp
# https://sourceforge.net/projects/boost/files/boost/1.51.0/boost_1_51_0.tar.gz/download
tar zxvf boost_1_51_0.tar.gz 
cd boost_1_51_0/
./bootstrap.sh --prefix=/share/osgeo/fw/boost/1.51 --with-libraries=all --with-python=/usr/bin/python --with-python-root=/usr/bin/
./b2
./bjam install
sudo mkdir -p /share/osgeo/fw/boost/1.51.0/bin
sudo cp bjam /share/osgeo/fw/boost/1.51.0/bin/

# HDF5
cd ~/tmp
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.9/src/hdf5-1.8.9.tar.gz
tar zxvf hdf5-1.8.9.tar.gz 
cd hdf5-1.8.9/
./configure --prefix=/share/osgeo/fw/hdf5/1.8.9 --enable-cxx --enable-shared -with-pic
make
sudo make install

# FFTW
cd ~/tmp
# wget http://www.fftw.org/fftw-3.3.2.2-pl2.tar.gz
# tar zxvf fftw-3.3.6-pl2.tar.gz 
cd fftw-3.3.6-pl2/
./configure --prefix=/share/osgeo/fw/fftw/3.3.6-pl2 --enable-shared --disable-static CPPFLAGS=-fPIC; make clean; make
sudo make install
# xerces
cd ~/tmp
#wget http://ftp.meisei-u.ac.jp/mirror/apache/dist//xerces/c/3/sources/xerces-c-3.1.1.tar.gz
#tar zxvf xerces-c-3.1.1.tar.gz 
cd xerces-c-3.1.1/
./configure --prefix=/share/osgeo/fw/xerces-c/3.1.1; make clean; make
sudo make install

# GSL
cd ~/tmp
#wget http://ftp.jaist.ac.jp/pub/GNU/gsl/gsl-2.4.tar.gz
#tar zxvf gsl-2.4.tar.gz 
cd gsl-2.4/
./configure --prefix=/share/osgeo/fw/gsl/2.4; make clean; make
sudo make install

 
# MuParser
cd ~/tmp
# wget https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz
# tar zxvf v2.2.5.tar.gz
cd muparser-2.2.5
./configure --prefix=/share/osgeo/fw/muparser/2.2.5; make clean; make
sudo make install


# GEOS
cd ~/tmp
#wget http://download.osgeo.org/geos/geos-3.5.0.tar.bz2
#bunzip2 geos-3.5.0.tar.bz2 
#tar xvf geos-3.5.0.tar
cd geos-3.5.0/
./configure --prefix=/share/osgeo/fw/geos/3.5.0; make clean; make
sudo make install

# PROJ4
cd ~/tmp
#wget http://download.osgeo.org/proj/proj-4.9.3.tar.gz
#tar zxvf proj-4.9.3.tar.gz 
cd proj-4.9.3/
./configure --prefix=/share/osgeo/fw/proj4/4.9.3; make clean; make
sudo make install

# kea
cd ~/tmp
#hg clone https://bitbucket.org/chchrsc/kealib
cd kealib/trunk
cmake -D CMAKE_INSTALL_PREFIX=/share/osgeo/fw/libkea/1.30 -D CMAKE_VERBOSE_MAKEFILE=ON -D HDF5_INCLUDE_DIR=/share/osgeo/fw/hdf5/1.8.19/include -D HDF5_LIB_PATH=/share/osgeo/fw/hdf5/1.8.19/lib .
make clean; make
sudo make install

# gmp
cd ~/tmp/
wget https://ftp.gnu.org/gnu/gmp/gmp-5.1.3.tar.gz
tar zxvf gmp-5.1.3.tar.gz
cd gmp-5.1.3/
./configure --prefix=/share/osgeo/fw/gmp/5.1.3 --enable-cxx --enable-fit; make clean; make
sudo make install

# GDAL
cd ~/tmp
# wget http://download.osgeo.org/gdal/2.2.0/gdal-2.2.0.tar.gz
# tar zxvf gdal-2.2.0.tar.gz
cd gdal-2.2.0/
./configure --prefix=/share/osgeo/fw/gdal/2.2.0 --with-hdf5=/share/osgeo/fw/hdf5/1.8.19 --with-python --enable-shared=yes --enable-static=no
make
sudo make install



# RSGISLib
cd ~/tmp
hg clone https://bitbucket.org/petebunting/rsgislib rsgislib-code

# download the document
wget https://bitbucket.org/petebunting/rsgislib-documentation/downloads/RSGISLib_Docs_20130926.pdf

cd ~/tmp/rsgislib-code
cmake -D CMAKE_INSTALL_PREFIX=/usr/local -D GEOS_INCLUDE_DIR=/share/osgeo/fw/geos/3.5.0/include -D GEOS_LIB_PATH=/share/osgeo/fw/geos/3.5.0/lib -D HDF5_INCLUDE_DIR=/share/osgeo/fw/hdf5/1.8.19/include/ -D HDF5_LIB_PATH=/share/osgeo/fw/hdf5/1.8.19/lib -D XERCESC_INCLUDE_DIR=/share/osgeo/fw/xerces-c/3.1.4/include -D XERCESC_LIB_PATH=/share/osgeo/fw/xerces-c/3.1.4/lib -D GDAL_INCLUDE_DIR=/share/osgeo/fw/gdal/2.2.0/include/ -D GDAL_LIB_PATH=/share/osgeo/fw/gdal/2.2.0/lib/ -D GSL_INCLUDE_DIR=/share/osgeo/fw/gsl/2.4/include -D GSL_LIB_PATH=/share/osgeo/fw/gsl/2.4/lib -D FFTW_INCLUDE_DIR=/share/osgeo/fw/fftw/3.3.6-pl2/include -D FFTW_LIB_PATH=/share/osgeo/fw/fftw/3.3.6-pl2/lib -D KEA_INCLUDE_DIR=/share/osgeo/fw/libkea/1.30/include/ -D KEA_LIB_PATH=/share/osgeo/fw/libkea/1.30/lib/ -D GMP_INCLUDE_DIR=/share/osgeo/fw/gmp/5.0.5/include -D GMP_LIB_PATH=/share/osgeo/fw/gmp/5.0.5/lib -D MUPARSER_INCLUDE_DIR=/share/osgeo/fw/muparser/2.2.5/include/ -D MUPARSER_LIB_PATH=/share/osgeo/fw/muparser/2.2.5/lib/ -D CMAKE_VERBOSE_MAKEFILE=ON .
make clean; make; sudo make install
 
export LD_LIBRARY_PATH=/share/osgeo/fw/fftw/3.3.6-pl2/lib:/share/osgeo/fw/gdal/2.2.0/lib:/share/osgeo/fw/geos/3.5.0/lib:/share/osgeo/fw/gmp/5.0.5/lib:/share/osgeo/fw/gsl/2.4/lib:/share/osgeo/fw/hdf5/1.8.19/lib:/share/osgeo/fw/libkea/1.30/lib:/share/osgeo/fw/muparser/2.2.5/lib:/share/osgeo/fw/proj4/4.9.3/lib:/share/osgeo/fw/xerces-c/3.1.4/lib

How to use in python

$ ipython
import sys
sys.path.append('/usr/local/lib/python2.7/dist-packages/')
Last modified:2017/09/06 17:03:24
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